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OME-TIFF
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Segmentation
Thresholding
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Connected component labeling
Object shape measurements
Nuclei segmentation and shape measurement
Fluorescence microscopy image formation
Object intensity measurements
Global background correction
Neighborhood filters
Median filter
2D noisy object segmentation and filtering
Morphological filters
Local background correction
Object filtering
Distance transform
Watershed
Nuclei and cells segmentation
Skeletonization
Similarity transformations
Running a script
Coding with LLMs
Recording a script
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Batch exploration of segmentation results
Handling input parameters
Setting up a scripting environment
Deep learning instance segmentation
Manual segmentation
Segment Golgi objects per cell
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Bioimage Analysis Training Resources
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